Products & Resources

We promote interdisciplinary collaboration within FIU and beyond to address local and regional issues of environmental contamination. Over the course of this project, we will provide various tools to aid both internal and external partners in this collaborative work.

This page is a portal to our products and outcomes, including information from our original proposal, presentation slides about the Center and its projects, publications, application information for interested students, funding forms for current participants, citation information and project databases.

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Publications & Related Data

2020 Publications
Castellanos, A., M. G. Hernandez, M. Tomic-Canic, I. Jozic and F. Fernandez-Lima. Multimodal, in Situ Imaging of Ex Vivo Human Skin Reveals Decrease of Cholesterol Sulfate in the Neoepithelium during Acute Wound Healing. Analytical Chemistry, 2020, 92, 1386-1394. DOI: 10.1021/acs.analchem.9b04542
Durán, A., Flood P., Barton, M., Mercado-Molina, A.E., Trexler, J.C. Invasion impacts on function and services of aquatic ecosystems. Hydrobiologia (Under Review)
Mekonnen, Y., L. Burton, A. Sarwat, S. Bhansali, “Sensors, IoT, Smart Agriculture and Future of Smart City”, Submitted to Journal of Electrochemical Society, 2020 (Under Review)
Mekonnen, Y., S. Namduri, L. Burton, A. Sarwat, S. Bhanslai, “Machine Learning Techniques in Wireless Sensor Network based Precision Agriculture”, Journal of Electrochemical Society, 2020 (In press)
Namuduri, S., B.N. Narayanan, V.S.P. Davuluru, L. Burton, S. Bhansali, “Deep Learning Methods for Sensor based Predictive Maintenance and Future Perspectives for Electrochemical Sensors”, Journal of Electrochemical Society, 2020 (In press)
Ng, B., Quinete, N., & Gardinali, P. R. (2020). Assessing accuracy, precision and selectivity using quality controls for non-targeted analysis. Science of The Total Environment, 136568 (In press)
Strickland, B.A. et al 2020. Variation in movement behavior of alligators in response to a major hurricane. Journal Of Animal Biotelemetry (Under Review)
2019 Publications
Erin-Lopez JM., Putnam HM. "Annual Review of Marine Science, Marine Environmental Epigenetics". Annu. Rev. Mar. Sci. 2019. 11:7.1–7.34.
Suarez-Ulloa V., Rivera-Casas C., Michel M., Eirin-Lopez JM. "Seasonal DNA methylation variation in the flat tree oyster Isognomon Alatus from a mangrove ecosystem in north Biscayne Bay, Florida" Journal of Shellfish Research, Vol. 38, No. 1, 1–10, 2019.
Castellanos A., Ramirez C., Michalkova V., Nouzova M., Noriega F., Fernandez-Lima F. (2019). "Three Dimensional Secondary Ion Mass Spectrometry Imaging (3D-SIMS) of Aedes aegypti ovarian follicles". Journal of Analytical Atomic Spectrometry.
- Supplementary Data - Three Dimensional Secondary Ion Mass Spectrometry Imaging (3D-SIMS) of Aedes aegypti ovarian follicles
Abiy A.Z., Melesse A.M., Abtew W., Whitman D. (2019). "Rainfall trend and variability in Southeast Florida: Implications for freshwater availability in the Everglades." PLoS ONE. 14 (2).
- Supplementary Data - Rainfall trend and variability in Southeast Florida: Implications for freshwater availability in the Everglades
Leyva D., Valadares L., Porter J., Wolff J., Jaffè R., Fernandez-Lima F. (2019). "Understanding the Structural Complexity of Dissolved Organic Matter: isomeric diversity." Faraday Discussions.
- Supplementary Data - Understanding the Structural Complexity of Dissolved Organic Matter: isomeric diversity
Regier P., Briceño H., Boyer J.N. (2019) "Analyzing and comparing complex environmental time series using a cumulative sums approach". MethodsX. Vol. 6, pg 779-787.
Eggenberger C.W., Santos R.O., Frankovich T.A., James W.R., Madden C.J., Nelson J.A., Rehage J.S.(2019) "Coupling telemetry and stable isotope techniques to unravel movement: Snook habitat use across variable nutrient environments". Fisheries Research.
Abiy A.Z., Melesse A.M., Abtew W. "Teleconnection of Regional Drought to ENSO, PDO, and AMO: Southern Florida and the Everglades". Atmosphere (2019), 10, 295
Moncada A. (2019) Theme 4: "What Does Diversity Require of Us?". Fisheries, 44: 373-374.
Beal A.P., Kiszka J.J., Wells R.S. and Eirin-Lopez J.M. (2019) "The Bottlenose Dolphin Epigenetic Aging Tool (BEAT): A Molecular Age Estimation Tool for Small Cetaceans". Front. Mar. Sci. 6:561.
- Raw Data - The Bottlenose Dolphin Epigenetic Aging Tool (BEAT): A Molecular Age Estimation Tool for Small Cetaceans
2018 Publications
Hernández-Delgado EA, Mercado-Molina AE, Suleimán-Ramos SE, and Lucking MA. (March 28th 2018). "Multi-disciplinary Lessons Learned from Low-Tech Coral Farming and Reef Rehabilitation: II. Coral Demography and Social-Ecological Benefits, Corals in a Changing World Carmenza Duque", IntechOpen.
Benigni, P., Porter, J., Ridgeway, M.E., Park, M.A., Fernandez-Lima F. “ Increasing Analytical Separation and Duty Cycle with Nonlinear Analytical Mobility Scan Functions in TIMS-FT-ICR MS” Anal. Chem., 2018, 90 (4), pp 2446–2450.
- Supplementary Data - Increasing Analytical Separation and Duty Cycle with Nonlinear Analytical Mobility Scan Functions in TIMS-FT-ICR MS
Beal A, Rodriguez-Casariego JA, Rivera-Casas C, Suarez-Ulloa V, Eirin-Lopez JM. #71 " Environmental Epigenomics and Its Applications in Marine Organisms".
Rodriguez‐Casariego JA, Ladd MC, Shantz AA, Lopes C, Cheema MS, Kim B, Roberts SB, Fourqurean JW, Ausio J, Burkepile DE, Erin-Lopez JM." Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral Acropora cervicornis " . Ecol Evol. 2018; 00:1–15.
- Supplementary Data - Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral Acropora cervicornis
- Raw Data - Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coralAcropora cervicornis
Banisakher D, Presa-Reyes ME, Eisenberg JD, Allen J, Finlayson MA, Price R, Chen SC. " Ontology-Based Supervised Concept Learning for the Biogeochemical Literature," 2018 IEEE International Conference on Information Reuse and Integration (IRI), Salt Lake City, UT, 2018, pp. 402-410.
- Supplementary Data - Molecular determinants of brain vascular disorders from exposure to polychlorinated biphenyls.
Tose LV, Benigni P, Leyva D, Sundberg A, Ramírez CE, Ridgeway ME (2018). Coupling trapped ion mobility spectrometry to mass spectrometry: trapped ion mobility spectrometry–time-of-flight mass spectrometry versus trapped ion mobility spectrometry–Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry. 32 (15), 1287.
Joshua Eisenberg. Automatic Extraction of Narrative Structure from Long Form Text. (2018). Florida International University.
Smith, Abraham Jeffrey. Development and Application of Aquatic Toxicology Studies for the Assessment of Impacts Due to Chemical Stressors Using Non-Standard Indigenous Organisms. (2018). Florida International University.
2017 Publications
Benigni, P., Marin, R. Sandoval, K., Gardinali, P., Fernandez-Lima, F., "Chemical Analysis of Water-accommodated Fractions of Crude Oil Spills Using TIMS-FT-ICR MS" Journal of Visualized Experiments (JOVE) 2017 , Issue 121, e55325.
Benigni, P., Sandoval, K., Thompson, C.J., Ridgeway, M.E., Park, M.A., Gardinali, P., Fernandez-Lima, F., "Analysis of Photoirradiated Water Accommodated Fractions of Crude Oils Using Tandem TIMS and FT-ICR MS" Environmental Science & Technology 2017, Vol. 51 (11), pp 5978-5988.
- Supplementary Data - Analysis of Photoirradiated Water Accommodated Fractions of Crude Oils Using Tandem TIMS and FT-ICR MS
Eisenberg, J.D., Banisakher, D., Presa, M., Unthank, K., Finlayson, M., Price, R., & Chen, S.C., "Toward Semantic Search for the Biogeochemical Literature" IEEE International Conference on Information Reuse and Integration (IRI) 2017, pp 517-525.
Gonzalez-Raymat, H., Liu, G.L., Liriano, C., Li, Y.B., Yin, Y.G., Shi, J.B., Jiang, G.B., Cai, Y., "Elemental mercury: Its unique properties affect its behavior and fate in the environment" Environmental Pollution 2017, Vol. 229, pp 69-86.
Gonzalez-Romero, R., Suarez-Ulloa, V., Rodriguez-Casariego, J., Garcia-Souto, D., Diaz, G.,Smith, A., Pasantes, J.J., Rand, G., Eirin-Lopez, J.M., "Effects of Florida Red Tides on Histone variant expression and DNA methylation in the Eastern oyster Crassostrea virginica" Aquatic Toxicology 2017, Vol. 186, pp 196–204.
Pouyanfar, S., and Chen, S.C. "T-LRA: Trend-based Learning Rate Annealing for Deep Neural Networks" IEEE Third International Conference on Multimedia Big Data 2017, pp 50-57.
Prego-Faraldo, M.V., Vieira, L.R., Eirin-Lopez, J.M., Mendez, J., Guilhermino, L., "Transcriptional and biochemical analysis of antioxidant enzymes in the mussel Mytilus galloprovincialis during experimental exposures to the toxic dinoflagellate Prorocentrum lima" Marine Environmental Research 2017, Vol. 129, pp 304-315.
Regier, P. “Linking Organic Matter Dynamics to Management, Restoration, and Climate in the Florida Everglades” (2017) FIU Electronic Theses and Dissertations.3385.
Rivera-Casas, C., Gonzalez-Romero, R., Garduño, R.A., Cheema, M.S., Ausio, J., Eirin-Lopez, J.M., "Molecular and Biochemical Methods Useful for the Epigenetic Characterization of Chromatin-Associated Proteins in Bivalve Molluscs" Frontiers in Physiology2017, Vol. 8 (490).
Tian, H.M., and Chen, S.C. "MCA-NN: Multiple Correspondence Analysis based Neural Network for Disaster Information Detection" IEEE Third International Conference on Multimedia Big Data 2017, pp 268-275.
2016 Publications
Flower, H., Rains, M., Lewis, D., Zhang, J., Price, R., "Saltwater intrusion as potential driver of phosphorus release from limestone bedrock in a coastal aquifer" Estuarine, Coastal and Shelf Science 2016, Vol. 184, pp 166-176.
Pouyanfar, S., and Chen, S.C., "Semantic Concept Detection Using Weighted Discretization Multiple Correspondence Analysis for Disaster Information Management" IEEE 17th International Conference on Information Reuse and Integration (IRI) 2016, pp 556-564.
Pouyanfar, S. and Chen S.C., "Semantic Event Detection Using Ensemble Deep Learning" IEEE International Symposium on Multimedia (ISM) 2016, San Jose, CA. pp 203-208.
Sadiq, S., Yan, Y., Shyu, M.L., Chen, S.C., & Ishwaran, H. "Enhancing Multimedia Imbalanced Concept Detection Using VIMP in Random Forests" Proceedings of the IEEE International Conference on Information Reuse and Integration 2016, pp 601–608.
Yan, Y., Zhu, Q., Shyu, M. L., & Chen, S.C. "A classifier ensemble framework for multimedia big data classification" IEEE 17th International Conference on Information Reuse and Integration (IRI) 2016, pp 615-622.

Facilities & Equipment

We provide computer stations, labs and workspaces on both the Modesto Maidique and Biscayne Bay Campuses at FIU, which are available to all affiliated students, postdocs, faculty and staff.

We also operate the CAChE Nutrient Analysis Lab, which represents three distinct services; first, it serves as a NELAC-accredited nutrient analysis laboratory to directly support research; second, it contains a dedicated student area for education and training related to traditional water quality analyses; and finally, it provides a space where students and faculty can work to improve or innovate technologies, and develop alternative or novel techniques.

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