We promote interdisciplinary collaboration within FIU and beyond to address local and regional issues of environmental contamination. Over the course of this project, we will provide various tools to aid both internal and external partners in this collaborative work.

This page is a portal to our products and outcomes, including information from our original proposal, presentation slides about the Center and its projects, publications, application information for interested students, funding forms for current participants, citation information and project databases.

Publications & Related Data

  • 2024 Publications

    Annunziato, M., et al. (2024). "An Integrated Metabolomics-Based Model, and Identification of Potential Biomarkers, of Perfluorooctane Sulfonic Acid (PFOS) Toxicity in Zebrafish Embryos" - Accepted in Environmental Toxicology and Chemistry.


    Cardé, J., Litz, J., Brossard, A., Wicker, J., Contillo, J., Kiszka, J. (submission January-February 2024). Long-term dynamics of the home range and fine-scale population structure of bottlenose dolphins in an urban lagoon in Southern Florida. Aquatic Conservation: Marine and Freshwater Ecosystems (under NOAA internal review).


    Cardé, J., Litz, J., Bouveroux, T., Brossard, A., Wicker, J., Contillo, J., Kiszka, J. (submission January-February 2024). Social structure of coastal bottlenose dolphins over three decades of increasing human impacts in a subtropical lagoon in South Florida, USA. Behavioral Ecology and Sociobiology (under NOAA internal review).


    Cardé, J., Caputo, M., Litz, J., Brossard, A., Wicker, J., Contillo, J., Kiszka, J. (submission February-March 2024). Community-level variation of the foraging ecology of coastal bottlenose dolphins (Tursiops truncatus) in a subtropical lagoon experiencing significant seagrass decline in Southern Florida. Marine Ecology Progress Series. (Under NOAA internal review).


    Rojas et al., “Combining Multi-Satellite Remote and In-situ Sensing for Autonomous Underwater Vehicle Localization and Navigation.” (in Review)


    Collins, S.B., Bracken-Grissom, H.D. Accepted. The Language of Light: a review of bioluminescence in deep-sea decapods. Biological Bulletin.


    Fernandez-Rojas, M.*, Fuller, C.N.*, Valadares Tose, L., Willets, M., Park, M.A., Bhanu, N.V., Garcia, B.A., Fernandez-Lima, F. Histone Modification Screening using Liquid Chromatography, Trapped Ion Mobility Spectrometry, and Time-Of-Flight Mass Spectrometry. Accepted by JoVE, awaiting publication.


    Heath, Courtney, “Prioritization of Emerging Pollutants Used for Fingerprinting for Specific Water Sources,” Emerging Pollutants, UNESCO: Singer, in review


    Helgoe, Joshua, “Triggers, Cascades, and Endpoints: connecting the dots of coral bleaching mechanisms” Biological Reviews - submitted


    Paduani, M., Ross, M. & Odom, G. Mangrove Forests of Biscayne Bay, FL, USA may Act as Sinks for Plastic Debris. Wetlands 44, 32 (2024). https://doi.org/10.1007/s13157-024-01785-9


    Rodriguez-Casariego, J.A., Mercado-Molina, A., Lemos, L.S. et al. Multi-omic characterization of mechanisms contributing to rapid phenotypic plasticity in the coral Acropora cervicornis under divergent environments. Coral Reefs 43, 53–66 (2024). https://doi.org/10.1007/s00338-023-02446-9

  • 2023 Publications

    Anjuman, A., Xiang, Y., Liu, G. et al. Compositional and spectroscopic analysis of dissolved organic matter samples from Everglades periphyton and water. Environ Sci Pollut Res 30, 106502–106513 (2023). https://doi.org/10.1007/s11356-023-29461-1


    Annunziato, M.; Bashirova, N.; Eeza, M.N.H.; Lawson, A.; Benetti, D.; Stieglitz, J.D.; Matysik, J.; Alia, A.; Berry, J.P. High-Resolution Magic Angle Spinning (HRMAS) NMR Identifies Oxidative Stress and Impairment of Energy Metabolism by Zearalenone in Embryonic Stages of Zebrafish (Danio rerio), Olive Flounder (Paralichthys olivaceus) and Yellowtail Snapper (Ocyurus chrysurus). Toxins 2023, 15, 397. https://doi.org/10.3390/toxins15060397


    Binder BM, Rieucau G, Locascio JV, Taylor JC, Boswell KM. 2023. Active acoustic surveys reveal coastal fish community resistance to an environmental perturbation in South Florida. PeerJ 11:e14888 https://doi.org/10.7717/peerj.14888


    Bradbury, M. (2023). Site prioritization and the reproduction of inequity in the restoration of Biscayne Bay. The Canadian Geographer, 67(1), 92–105. https://doi.org/10.1111/cag.12817


    Campbell, L. J., Castillo, N.A., Dunn, C. D., Bose, S. M., Perez, A., Schmitter-Soto, J. J., Mejri, S. C., Boucek, R. E., Santos, R. O., Adams, A. J., Rehage, J. S., Goldberg, T. L. (2023). Gill microbiomes accurately predict the geographic origin of bonefish (Albula vulpes) when combined with machine learning models. Environ Biol Fish. https://doi.org/10.1007/s10641-023-01462-6


    Campbell, L.J., Castillo, N.A., Shenker, J., Owens, L.A., Santos, R.O., Adams, A.J., Rehage, J.S., Denton, K.E., Goldberg, T.L. (2022). Bone appetite: DNA metabarcoding as a non-lethal alternative to morphological dietary assessment in Atlantic bonefish (Albula vulpes). Environ Biol Fish. https://doi.org/10.1007/s10641-022-01328-3


    Castillo, N.A., James, W.R., Santos, R.O., Rezek, R., Cerveny, D., Boucek, R.E., Adams, A.J., Fick, J., Brodin, T., Rehage, J.S. (2023). Understanding pharmaceutical exposure and the potential for effects in marine biota: a survey of bonefish (Albula vulpes) across the Caribbean Basin. Chemosphere, 349(3):140949. https://doi.org/ 10.1016/j.chemosphere.2023.140949


    Dennys Leyva, Muhammad Usman Tariq, Rudolf Jaffé, Fahad Saeed, and Francisco Fernandez-Lima. Environmental Science & Technology 2023 57 (6), 2672-2681. DOI: 10.1021/acs.est.2c04715 "


    Flood PJ, Loftus WF, Trexler JC (2023) Fishes in a seasonally pulsed wetland show spatiotemporal shifts in diet and trophic niche but not shifts in trophic position. Food Webs 34:e00265. https://doi.org/10.1016/j.fooweb.2022.e00265


    Gervasi, C. L., Karnauskas, M., Rios, A., Santos, R. O., James, W. R., Rezek, R. J., & Rehage, J. S. (2023). Rapid approach for assessing an unregulated fishery using a series of data-limited tools. Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science, 15, e10270. https://doi.org/10.1002/mcf2.10270


    Hackerott, S., F. Virdis, P. J. Flood, D. G. Souto, W. Paez, J. M. Eirin-Lopez. (2023) Phenotypic plasticity is associated with epigenetic variation in two Caribbean Acropora corals. Molecular Ecology 32(17): 4814-4828


    Heather Stewart, Savanna Hearne, Casey Craig, Ryan P. Moyer, Erin McDevitt, Julie Mitchell, Loraé Simpson, Marbelys Garriga, Kara Radabaugh. 2023. Using mangrove monitoring to inform and guide restoration efforts.


    Ikechukwu S. Onwuka, Leonard J. Scinto, René M. Price, Assefa M. Melesse, Dynamics of particles and phosphorus in canals of the Lower Everglades, Florida, USA, Science of The Total Environment, Volume 902, 2023, 166508, ISSN 0048-9697, https://doi.org/10.1016/j.scitotenv.2023.166508.


    Jazmin Locke-Rodriguez, Tiffany Troxler, Michael C. Sukop, Leonard Scinto, Krish Jayachandran. Floating flowers: Screening cut-flower species for production and phytoremediation on floating treatment wetlands in South Florida, Environmental Advances, Volume 13, 2023, 100405, ISSN 2666-7657, https://doi.org/10.1016/j.envadv.2023.100405.


    Li X, Cui D, Ng B, Ogunbiyi OD, Guerra de Navarro M, Gardinali P, et al. Non-targeted analysis for the screening and semi-quantitative estimates of per-and polyfluoroalkyl substances in water samples from South Florida environments. J Hazard Mater 2023;452. https://doi.org/10.1016/j.jhazmat.2023.131224.


    Locke-Rodriguez, J., Troxler, T., Sukop, M., Scinto, L., and Jayachandran, K. 2023. Floating flowers: Screening cut-flower species for production and phytoremediation on floating treatment wetlands in South Florida. Environmental Advances, 13, 100405. ISSN 2666-7657


    Alsayegh, J. Fuentes, L. Bobadilla, and D. Shell, “Oblivious Markov Decision Processes: Planning and Policy Execution.” Accessed: Dec. 18, 2023. [Online]. Available: https://cse-robotics.engr.tamu.edu/dshell/papers/cdc23mdp.pdf


    Miguel Santos-Fernandez, Kevin Jeanne Dit Fouque, and Francisco Fernandez-Lima. Integration of Trapped Ion Mobility Spectrometry and Ultraviolet Photodissociation in a Quadrupolar Ion Trap Mass Spectrometer. Analytical Chemistry 2023 95 (22), 8417-8422. DOI: 10.1021/acs.analchem.3c01220


    Miller, S. A., Jeanne Dit Fouque, K., Hard, E. R., Balana, A. T., Kaplan, D., Voinov, V. G., Ridgeway, M. E., Park, M. A., Anderson, G. A., Pratt, M. R., & Fernandez-Lima, F. (2023). Top/Middle-Down Characterization of α‑Synuclein Glycoforms. Analytical Chemistry (Washington), 95(49), 18039–18045. https://doi.org/10.1021/acs.analchem.3c02405


    N.A. Castillo, W.R. James, R.O. Santos, R. Rezek, D. Cerveny, R.E. Boucek, A.J. Adams, T. Goldberg, L. Campbell, A.U. Perez, J.J. Schmitter-Soto, J.P. Lewis, J. Fick, T. Brodin, J.S. Rehage (2023). Understanding pharmaceutical exposure and the potential for effects in marine biota: A survey of bonefish (Albula vulpes) across the Caribbean Basin. Chemosphere, 140949, ISSN 0045-6535, https://doi.org/10.1016/j.chemosphere.2023.140949.


    Ogunbiyi, O. D., Ajiboye, T. O., Omotola, E. O., Oladoye, P. O., Olanrewaju, C. A., & Quinete, N. (2023). Analytical approaches for screening of per-and poly fluoroalkyl substances in food items: A review of recent advances and improvements. Environmental Pollution, 121705.


    Ogunbiyi, Olutobi, Massenat, Neumiah and Quinete, Natalia Soares. 2023. Dispersion and Stratification of Per-And Polyfluoroalkyl Substances (Pfas) in Surface and Deep-Water Profiles: A Case Study of the Biscayne Bay Area. Available at SSRN. http://dx.doi.org/10.2139/ssrn.4572299


    Perez, C.M., Gong, Z., Yoo, C. et al. Inhibitor of DNA Binding Protein 3 (ID3) and Nuclear Respiratory Factor 1 (NRF1) Mediated Transcriptional Gene Signatures are Associated with the Severity of Cerebral Amyloid Angiopathy. Mol Neurobiol (2023). https://doi.org/10.1007/s12035-023-03541-2


    Perez., C., M., Felty, Q., Yoo, C. et al. Inhibitor of DNA Binding Protein 3 (ID3) and Nuclear Respiratory Factor 1 (NRF1) Mediated Transcriptional Gene Signatures are Associated with the Severity of Cerebral Amyloid Angiopathy. Molecular Neurobiology. September 5th, 2023.


    Rodemann, J.R., James, W.R., Rehage, J.S., Baktoft, H., Costa, S.V., Ellis, R.D., Gonzalez, L., Corujo, R.S. Residency and fine-scale habitat use of juvenile Goliath Grouper (Epinephelus itajara) in a mangrove nursery. Bulletin of Marine Science, Volume 99, Number 2, 2023, pp. 111-118(8). DOI: https://doi.org/10.5343/bms.2022.0061


    Rodemann, J.R., James, W.R., Rehage, J.S., Baktoft, H., Costa, S.V., Ellis, R.D., Gonzalez, L., Santos, R.O., (2023) “Residency and fine-scale habitat use of juvenile goliath grouper (Epinephelus itajara) in a mangrove nursery.” Bulletin of Marine Science. https://doi.org/10.5343/bms.2022.0061


    Rojas, C. A.; Devesa, A.; Cabrera, H.; Reis, G. M.; Bobadilla, L.; Smith, R. N. (2023). Privacy-Preserving Multi-Agent Marine Data Collection via Differential Privacy. IEEE Oceans 2023 Gulf Coast Conference Online Proceedings.


    Rojas, C. A.; Padrao, P.V.; Fuentes, J.E.; Reis, G. M.; Albayrak, A. R.; Osmanoglu, B.; Bobadilla, L. (2023). Combining Multi-Satellite Remote and In-situ Sensing for Autonomous Underwater Vehicle Localization and Navigation. Available at SSRN 4521499


    Stormie B Collins, Heather D Bracken-Grissom, J Antonio Baeza, The complete mitochondrial genome of the pink shrimp Farfantepenaeus duorarum (Burkenroad, 1939) (Decapoda: Dendrobranchiata: Penaeidae), Journal of Crustacean Biology, Volume 42, Issue 1, March 2022, ruac007, https://doi.org/10.1093/jcbiol/ruac007


    Sturges et al., 2023 (in-revision) Seasonality drives green and brown energy pathways in food webs across an ecosystem gradient


    Timm, L, Tucker N, Rix A, LaBua S, Andrés Lopez J, Boswell K, Glass J. 2023. The untapped potential of seascape genomics in the North Pacific. Frontiers in Conservation Science. https://doi.org/10.3389/fcosc.2023.1249551.


    Troxell, Kassidy & Ceccopieri, Milena & Gardinali, Piero. (2023). Unraveling the chemical fingerprint of the Miami River sources: Insights from high-resolution mass spectrometry and nontarget analysis. Chemosphere. 349. 140863. 10.1016/j.chemosphere.2023.140863.


     Varela, C., Iporac, L.A., Senna, A., 2023. A new species of Quadrimaera Krapp-Schickel & Ruffo, 2000 (Amphipoda: Senticaudata: Maeridae) from the east coast of Florida, USA. Novitates Caribaea 29–39. https://doi.org/10.33800/nc.vi21.325

  • 2022 Publications

    Annunziato, Mark, et al. (2022) “An Integrated Systems-Level Model of the Toxicity of Brevetoxin Based on High-Resolution Magic-Angle Spinning Nuclear Magnetic Resonance (HRMAS NMR) Metabolic Profiling of Zebrafish Embryos.” The Science of the Total Environment, vol. 803, Elsevier B.V, pp. 149858–149858, https://doi.org/10.1016/j.scitotenv.2021.149858.


    Beal A. P., S. Hackerott, K. Feldheim, S. Gruber, J. M. Eirin-Lopez (2022). Age group DNA methylation differences in lemon sharks (Negaprion brevirostris): Implications for future age estimation tools. Ecology and Evolution 12: e9226


    Boucek, R.E., Rehage, J., Castillo, N.A., Dowskin, E., Larkin, M., Santos, R., Navarre, C., Adams, A. (2022 in review). Using recreational tournament data to construct a 52 year timeseries of the Florida Keys recreational Bonefish fishery – In Review


    Bradbury, M. (2022). Site prioritization and the reproduction of inequity in the restoration of Biscayne Bay. The Canadian Geographer/Le Géographe canadien. https://doi.org/10.1111/cag.12817


    Campbell, L.J., Castillo, N.A., Dunn, C.D., Perez, A., Schmitter-Soto, J.J., Mejri, S., Boucek, R. E., Santos Corujo, R., Adams, A.J., Rehage, J.S., Goldberg, T. L. (2022 in review). Viruses of Atlantic Bonefish (Albula vulpes) show geographic patterns consistent with population declines. – In Review.


    Campbell, L.J., Castillo, N.A., Shenker, J., Owens, L.A., Santos, R.O., Adams, A.J., Rehage, J.S., Denton, K.E., Goldberg, T.L. (2022). Bone appetit: DNA metabarcoding as a non-lethal alternative to morphological dietary assessment in Atlantic bonefish (Albula vulpes). Environmental Biology of Fishes.


    Collins, S. B., Bracken-Grissom, H. D., & Baeza, J. A. (2022). The complete mitochondrial genome of the pink shrimp Farfantepenaeus duorarum (Burkenroad, 1939) (Decapoda: Dendrobranchiata: Penaeidae). Journal of Crustacean Biology, 42 (1), ruac007.


    Cui, D., Abdullah, A. M., Peller, J. R., Mezyk, S. P., Mebel, A., & O’Shea, K. (2022). Effectiveness of Photocatalysis, Radiolysis, and Ultrasonic Irradiation in the Remediation of GenX: Computational Study of the Ultrasonically Induced Mineralization. Journal of Environmental Engineering, 148 (11). https://doi.org/10.1061/(asce)ee.1943-7870.0002066


    Esmaeilian A., and O'Shea K., (2022) “Application of dimensional analysis in sorption modeling of the styryl pyridinium cationic dyes on reusable iron based humic acid coated magnetic nanoparticles” Chemosphere 286:131699.


    Esmaeilian A., Dionysiou D., and O'Shea K., (2022) “Incorporating the simultaneous effect of initial concentration and sorbent dose into removal prediction model using glyphosate experimental data and theoretical analysis” Chemical Engineering Journal.


    Gervasi CL, Nelson JA, Swart PK, Santos RO, Rezek RJ, James WR, Jefferson AE, Drymon JM, Carroll J, Boucek RE, & JS Rehage (2022) Otolith stable isotope micro-sampling to discriminate poorly studied stocks: Crevalle Jack in the eastern Gulf of Mexico. Estuarine, Coastal and Shelf Science. https://doi.org/10.1016/j.ecss.2022.108130


    Gervasi, C. L., Massie, J. A., Rodemann, J.R., Trabelsi, S., Santos, R. O., & Rehage, J. S. (2022). Recreational Angler Contributions to Fisheries Management Are Varied and Valuable: Case Studies from South Florida. Fisheries, 47 (11), 469-477.


    Iporac, L.A.R., Hatt, D., Bally, N.K., Castro, A., Cardet, E., Mesidor, R., Olszak, S., Duran, A., Burkholder, D., and Collado-Vides, L. (2022).  Community-based monitoring reveals spatiotemporal variation of sargasso inundation levels and morphotype dominance across the Caribbean and South Florida. Aquatic Botany.


    James WR, Bautista V, Rezek RJ, Zink IC, Rehage JS, & RO Santos (2022) A review of the potential impacts of commercial inshore pink shrimp fisheries on recreational flats fisheries in Biscayne Bay, FL, USA. Environmental Biology of Fishes. https://doi.org/10.1007/s10641-022-01319-4


    James WR, Santos RO, Rodemann JR, Rezek RJ, Fratto ZW, Furman BT, Hall MO, Kelble CR, Rehage JS, & JA Nelson (in revision) Widespread seagrass die-off has no legacy effect on basal resource use of seagrass food webs in Florida Bay, USA.


    Jeanne Dit Fouque, Kevin, Samuel A. Miller, Khoa Pham, Natarajan V. Bhanu, Yarixa L. Cintron-Diaz, Dennys Leyva, Desmond Kaplan, et al. (2022) Top-‘Double-Down’ Mass Spectrometry of Histone H4 Proteoforms: Tandem Ultraviolet-Photon and Mobility/Mass-Selected Electron Capture Dissociations. Analytical chemistry 94, 44: 15377–15385.


    Lemos, L.S., Gantiva, L., Kaylor, C., Sanchez, A., Quinete, N. (2022) "American Oysters as Bioindicators of Emerging Organic Contaminants in Florida, United States." Science of the Total Environment, 835 (6), 155316. dx.doi.org/10.2139/ssrn.4048906


    Leyva, D.; Jaffé, R.; Courson, J.; Kominoski, J.; Tariq, U.; Saeed, F.; and Fernandez-Lima, F. (2022). Molecular level characterization of DOM along a freshwater-to-estuarine coastal gradient in the Florida Everglades. Aquat. Sci., 84, 63.


    Leyva, D., Tariq U., Saeed, F., Jaffé, R.; Fernandez-Lima, F. (2022) “Unsupervised Structural Classification of Dissolved Organic Matter Based on Fragmentation Pathways.” Environ. Sci. Technol., 56 (2), 1458-1468.


    Li, X., Fatowe, M., Cui, D., & Quinete, N. (2022). Assessment of per- and polyfluoroalkyl substances in Biscayne Bay surface waters and tap waters from South Florida. Science of the Total Environment, 806, 150393. https://doi.org/10.1016/j.scitotenv.2021.150393


     Massie JA, Santos, RO, Rezek, RJ, James, WR, Viadero, NM, Boucek, RE, Blewett DA, Trotter AA, Stevens PW, & JS Rehage (2022). Primed and cued: long-term acoustic telemetry links interannual and seasonal variations in freshwater flows to the spawning migrations of Common Snook in the Florida Everglades. Movement Ecology. https://doi.org/10.1186/s40462-022-00350-5


    Miller, Samuel A., Kevin Jeanne Dit Fouque, Mark E. Ridgeway, Melvin A. Park, and Francisco Fernandez-Lima (2022). Trapped Ion Mobility Spectrometry, Ultraviolet Photodissociation, and Time-of-Flight Mass Spectrometry for Gas-Phase Peptide Isobars/Isomers/Conformers Discrimination. Journal of the American Society for Mass Spectrometry 33, 7: 1267–1275.


    B. Ng, N. Quinete, P. Gardinali. Differential organic contaminant ionization source detection and identification in environmental waters by non-targeted analysis. Environ. Toxicol. Chem. 2022. In Press. doi.org/10.1002/etc.5268.


    Padrao, P., Dominguez, A., Bobadilla, L. and Smith, R. (2022.). Towards Learning Ocean Models for Long-term Navigation in Dynamic Environments. In: OCEANS 2022-Chennai. IEEE


    Padrao, P., Fuentes, J., Bobadilla, L. and Smith, R.N. (2022). Estimating spatio-temporal fields through reinforcement learning. Frontiers in Robotics and AI, 9. doi:10.3389/frobt.2022.878246.


    Perez C, Felty Q. Molecular basis of the association between transcription regulators nuclear respiratory factor 1 and inhibitor of DNA binding protein 3 and the development of microvascular lesions. Microvascular Research. 2022 Feb: 104337. DOI: 10.1016/j.mvr.2022.104337. PMID: 35143811.


    Perez, C., Felty, Q., Yoo, C.W., Roy, D., Deoraj, A. (2022). Molecular Contributions of NRF1 and ID3 to Vascular Toxicity in Cerebral Amyloid Angiopathy. Society of Toxicology 61st Annual Meeting. Toxicological Sciences: The Toxicologist. San Diego, California.


    Pezeshk, S. (2022) Bio-Tile: An Intelligent Hybrid-Infrastructure. In: Yuan P.F., Chai H., Yan C., Leach N. (eds) Proceedings of the 2021 Digital FUTURES. CDRF 2021. Springer, Singapore. https://doi.org/10.1007/978-981-16-5983-6_8


    Rezek RJ, James WR, Bautista V, Zink IC, Rehage JS, & RO Santos (2022). Temporal trends of Biscayne Bay pink shrimp fisheries catch and economic indicators. Environmental Biology of Fishes. https://doi.org/10.1007/s10641-022-01314-9


    Rodriguez-Casariego, Javier A., Ross Cunning, Andrew C. Baker, and Jose M. Eirin-Lopez (2022). Symbiont Shuffling Induces Differential DNA Methylation Responses to Thermal Stress in the Coral Montastraea Cavernosa. Molecular Ecology 31 (2): 588–602.


    Rojas, C., Padrao, P., Fuentes, J., Albayrak, A., Osmanoglu, B. and Bobadilla, L. (2022). Combining Remote and In-situ Sensing for Autonomous Underwater Vehicle Localization and Navigation. In: OCEANS 2022, Hampton Roads. IEEE, pp.1–7.


    Santos RO, James WR, Nelson JA, Rehage JS, Serafy J, Pittman SJ, & D Lirman (2022) Influence of seascape spatial pattern on the trophic niche of an omnivorous fish. Ecosphere https://doi.org/10.1002/ecs2.3944


    Troxell, K., Ng, B., Ley, I. and Gardinali, P. (2022), Detecting Water Constituents Unique to Septic Tanks as a Wastewater Source in the Environment by Non-target Analysis; South Florida’s Deering Estate Rehydration Project Case Study. Environ Toxicol Chem. Accepted Author Manuscript. https://doi.org/10.1002/etc.5309


    Zahilyn D. Roche Allred, Brianna L. Martinez, Abigail Green, Anthony Farias, Ana Tomlinson, Jeffrey Gonzalez, Aaron Rose, Alex Kararo, Kristin Parent, Rebecca Matz, Sonia Underwood, (2022) “Lessons Learned from the Implementation and Evaluation of Multidisciplinary Activities”, Journal of Chemical Education, under review.

  • 2021 Publications

    B. J. Place, E. M. Ulrich, J. K. Challis, A. Chao, B. Du, K. Favela, Y. Feng, C. M. Fisher, P. Gardinali, A. Hood, A. M. Knolhoff, A. D. McEachran, S. L. Nason, S. R. Newton, B. Ng, J. Nuñez, K. T. Peter, A. L. Phillips, N. Quinete, R. Renslow, J. R. Sobus, E. M. Sussman, B. Warth, S. Wickramasekara, A. J. Williams. An introduction to the benchmarking and publications for non-targeted analysis working group. Anal. Chem. 2021, 93 (49), 16289-16296.


    Balderas-Guzman, C., Wang, R., Muellerklein, O., Smith, M.A., & Eger, C.G. (2021). Comparing stormwater quality and watershed typologies across the United States: a machine learning approach. Water Research. (In Review)


    Beal, A., Hackerott, S., Franks, B., Gruber, S. H., Feldheim, K., & Eirin-Lopez, J. M. (2021) Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas. Ecological Indicators, 127, 107793. https://doi.org/10.1016/j.ecolind.2021.107793


    Cerveny, D., Fick, J., Klaminder, J., McCallum, E.S., Bertram, M.G., Castillo, N.A., Brodin, T. (2021) “Water temperature affects the biotransformation and accumulation of a psychoactive pharmaceutical and its metabolite in aquatic organisms.” Environment International, 155, 106705. https://doi.org/10.1016/j.envint.2021.106705


    Gaiser, E.E., J.S. Kominoski, D.M. McKnight, C.A. Bahlai, C. Cheng, S. Record, W. Wollheim, K.R. Christianson, M.R. Downs, P.A. Hawman, S.J. Holbrook, A. Kumar, D.R. Mishra, N.P. Molotch, R.B. Primack, A. Rassweiler, R.J. Schmitt, L. Sutter. Long-term ecological research and the COVID-19 anthropause: A window to understanding social-ecological disturbance. Ecosphere (in press) 


    García Barcia L, Pinzone M, Lepoint G, Pau C, Das K, Kiszka JJ. Factors affecting mercury concentrations in two oceanic cephalopods of commercial interest from the southern Caribbean. Mar Pollut Bull. 2021 Jul;168:112408. doi: 10.1016/j.marpolbul.2021.112408. Epub 2021 May 6. PMID: 33965692. 


    Gervasi CL, Santos RO, Rezek RJ, James WR, Boucek RE, Bradshaw C, Kavanagh C, Osborne J, & Rehage JS (2021) Bottom-up conservation: Using translational ecology to inform conservation priorities for a recreational fishery. Canadian Journal of Fisheries and Aquatic Sciences https://doi.org/10.1139/cjfas-2021-0024 


    Hackerott, S., H. A. Martell, J. M. Eirin-Lopez. (2021) Coral environmental memory: Causes, mechanisms, and consequences for future reefs. Trends in Ecology and Evolution 36: 1011-1023 


    James WR, Santos RO, Rehage JS, Doerr JC, & JA Nelson (2021) E-scape: consumer specific landscapes of energetic resources derived from stable isotope analysis and remote sensing. Journal of Animal Ecology https://doi.org/10.1111/1365-2656.13637 


    Juliet M. Wong and Jose M. Eirin-Lopez (2021) Evolution of methyltransferase like (METTL) proteins in Metazoa: A complex gene family involved in epitranscriptomic regulation and other epigenetic processes. Molecular Biology and Evolution msab267. https://doi.org/10.1093/molbev/msab267 


    Kimball ME, Connolly RM, Alford SB, Colombano DD, James WR, Kenworth MD, Norris GS, Ollerhead J, Ramsden S, Rehage JS, Sparks EL, Waltham NJ, Worthington TA, & Taylor MD (2021) Novel applications of technology for advancing tidal marsh ecology. Estuaries & Coasts doi: 10.1007/s12237-021-00939-w 


    Li, X., Fatowe, M., Cui, D., Quinete, N. (2021) "Assessment of per- and polyfluoroalkyl substances in Biscayne Bay surface waters and tap waters from South Florida." Science of the Total Environment, 806, 1, 150393. https://doi.org/10.1016/j.scitotenv.2021.150393


    Lugo Charriez, K., Soledade Lemos, L., Carrazana, Y. et al. Application of an Improved Chloroform-Free Lipid Extraction Method to Staghorn Coral (Acropora cervicornis) Lipidomics Assessments. Bull Environ Contam Toxicol 107, 92–99 (2021). https://doi.org/10.1007/s00128-020-03078-3


    Meeder, J.F., Parkinson, R.W., Ogurcak, D. et al. (2021) "Changes in Sediment Organic Carbon Accumulation under Conditions of Historical Sea-Level Rise, Southeast Saline Everglades, Florida, USA," Wetlands. https://doi.org/10.1007/s13157-021-01440-7


    Moncada, A.M., Melesse, A.M., Vithanage, J., Price, R.M. (2021) "Long-Term Assessment of Surface Water Quality in a Highly Managed Estuary Basin." International Journal of Environmental Research and Public Health, 18, 9417. https://doi.org/10.3390/ijerph18179417 


    Brian Ng, Natalia Quinete, Stephanie Maldonado, Kathleen Lugo, Julian Purrinos, Henry Briceño, Piero Gardinali. (2021) "Understanding the occurrence and distribution of emerging pollutants and endocrine disruptors in sensitive coastal South Florida Ecosystems." Science of the Total Environment 757. https://doi.org/10.1016/j.scitotenv.2020.143720


    Olanrewaju, C. A., Ramirez, C. E., & Fernandez-Lima, F. (2021). Characterization of Deasphalted Crude Oils Using Gas Chromatography–Atmospheric Pressure Laser Ionization–Trapped Ion Mobility Spectrometry–Time-of-Flight Mass Spectrometry. Energy & Fuels, 35(17), 13722-13730. 


    Olanrewaju, C. A., Ramirez, C. E., & Fernandez-Lima, F. (2021). Comprehensive Screening of Polycyclic Aromatic Hydrocarbons and Similar Compounds Using GC–APLI–TIMS–TOFMS/GC–EI–MS. Analytical Chemistry, 93(15), 6080-6087.


    Onwuka, I.S., Scinto, L.J., Mahdavi Mazdeh, A. (2021) "Comparative Use of Hydrologic Indicators to Determine the Effects of Flow Regimes onWater Quality in Three Channels across Southern Florida, USA." Water 2021, 13, 2184. https://doi.org/10.3390/w13162184


    Peña, F., Nardi, F., Melesse, A., Obeysekera, J., Castelli, F., Price, R. M., Crowl, T., and Gonzalez-Ramirez, N.: Compound flood modelling framework for rainfall-groundwater interactions, Nat. Hazards Earth Syst. Sci. Discuss. [preprint], https://doi.org/10.5194/nhess-2021-259, in review, 2021. 


    Francisco Peña, Fernando Nardi, Assefa Melesse, Jayantha Obeysekera. (2021) "Assessing geomorphic floodplain models for large scale coarse resolution 2D flood modelling in data scarce regions." Geomorphology 389. https://doi.org/10.1016/j.geomorph.2021.107841


    Pittman SJ, Yates KL, Bouchet PJ,… James WR… (34 additional authors) (2021) Seascape ecology: Identifying research priorities for an emerging ocean sustainability science. Marine Ecology Progress Series https://doi.org/10.3354/meps13661 


    Presa-Reyes, Maria, and Shu-Ching Chen. "Weakly-Supervised Damaged Building Localization and Assessment with Noise Regularization." In 2021 IEEE 4th International Conference on Multimedia Information Processing and Retrieval (MIPR), pp. 8-14. IEEE, 2021. 


    Presa-Reyes, Maria, Yudong Tao, Shu-Ching Chen, and Mei-Ling Shyu. (2021) "Deep Learning with Weak Supervision for Disaster Scene Description in Low-Altitude Imagery." IEEE Transactions on Geoscience and Remote Sensing 


    Rodemann JR, James WR, Santos RO, Furman BT, Fratto ZW, Bautista V, Hernandez JL, Viadero NM, Linenfelser JO, Lacy LA, Hall MO, Kelble CR, Kavanaugh C, & JS Rehage (2021) Impact of extreme disturbances on suspended sediment in Western Florida Bay: Implications for seagrass resilience. Frontiers in Marine Science https://doi.org/10.3389/fmars.2021.633240 


    Rodriguez-Casariego J. A., R. Cunning, A. C. Baker, J. M. Eirin-Lopez (2021) Symbiont shuffling induces differential DNA methylation responses to thermal stress in the coral Montastraea cavernosa. Molecular Ecology, 00, 1-15 doi:10.1111/mec.16246 


    Russell Fielding, Jeremy J. Kiszka, Catherine Macdonald, Meaghan A. McCormack, Jessica Dutton, Alison D. Ollivierre, James A. Arnett, Molly Elkins, Niko A. Darby, Hannah-Marie Garcia, Suzanne Skinner, Haley Tucker & Vincent Reid (2021). "Demographic and geographic patterns of cetacean-based food product consumption and potential mercury exposure within a Caribbean whaling community." Human and Ecological Risk Assessment: An International Journal, 27:6, 1671-1695, DOI: 10.1080/10807039.2020.1870865 


    Smith, M. A., Kominoski, J. S., Gaiser, E. E., Price, R. M., & Troxler, T. G. (2021). Stormwater runoff and tidal flooding transform dissolved organic matter composition and increase bioavailability in urban coastal ecosystems. Journal of Geophysical Research: Biogeosciences, 126(7), e2020JG006146. 


    Tariq U., Leyva, D., Fernandez-Lima, F., Saeed, F. (2021) “Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter.” IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 3742-3746. 


    Van Dam, B., Polsenaere, P., Barreras-Apodaca, A., Lopes, C., Sanchez-Mejia, Z., Tokoro, T., et al. (2021). Global trends in air-water CO2 exchange over seagrass meadows revealed by atmospheric Eddy Covariance. Global Biogeochemical Cycles, 35, e2020GB006848. https://doi.org/10.1029/2020GB006848 


    Yando, E.S., T.M. Sloey, F. Dahdouh-Guebas, K. Rogers, G.M.O. Abuchahla, S. Cannicci, S.W.J. Canty, T.C. Jennerjahn, D.E. Ogurcak, J.B. Adams, R.M. Connolly, K. Diele, S.Y. Lee, J.K. Rowntree, S. Sharma, K.C. Cavanaugh, N. Cormier, I.C. Feller, S. Fratini, X. Ouyang, A.K.S. Wee, and D.A. Friess (2021). "Conceptualizing ecosystem degradation using mangrove forests as a model system." Biological Conservation 263, 109355. doi.org/10.1016/j.biocon.2021.109355

  • 2020 Publications

    Burton, L., K. Jayachandran, S. Bhansali, “The real-time revolution for in-situ soil nutrient sensing: A review,” Journal of the Electrochemical Society, January 2020 - Under Review


    Burton, L., V. Kamat, K. Jayachandran, S. Bhansali, “SensePod for real-time evaluation of plant phenotypic characteristics,” Journal of Biosensors and Bioelectronics, January 2020 - Under Review


    Castellanos, A., M. G. Hernandez, M. Tomic-Canic, I. Jozic and F. Fernandez-Lima. Multimodal, in Situ Imaging of Ex Vivo Human Skin Reveals Decrease of Cholesterol Sulfate in the Neoepithelium during Acute Wound Healing. Analytical Chemistry, 2020, 92, 1386-1394. DOI: 10.1021/acs.analchem.9b04542


    Charriez KL, Carrazana Y, Lemos LS, Hauser-Davis RA, Rodríguez-Casariego J, Eirin-Lopez JM, Quinete NS. Development of an improved chloroform-free lipid extraction method applied to staghorn Acropora cervicornis corals lipid determinations. Submitted to Bulletin of Environmental Contamination and Toxicology. 28 Aug 2020.


    Cui, D., Li, X., & Quinete, N. (2020). Occurrence, fate, sources and toxicity of PFAS: What we know so far in Florida and major gaps. Trends in Analytical Chemistry, 130, 115976. https://doi.org/10.1016/j.trac.2020.115976


    Durán, A., Flood P., Barton, M., Mercado-Molina, A.E., Trexler, J.C. Invasion impacts on function and services of aquatic ecosystems. Hydrobiologia (Under Review)


    Fielding, R., Kiszka, J., MacDonald, C., MacCornack, M.A., Dutton, J., Ollivierre, A.D., Arnett, J., Elkins, M., Darby, N.A., Garcia, H.-M., Skinner, S., Tucker, H. & Reid, V. "Demographic and geographic patterns of cetacean-based food product consumption and potential mercury exposure within a Caribbean whaling community". Human and Ecological Risk Assessment.


    Garcia-Barcia, L., Pinzone, M., Lepoint, G., Pau, C., Das, K. & Kiszka, J. "Mercury concentrations in relation to trophic level and body length in two oceanic cephalopods of commercial interest from the southern Caribbean". Marine Pollution Bulletin.


    Gaiser, E., Kominoski, J., McKnight, D., Bahlai, C., Cheng, C., Record, S., Wollheim, W., Christianson, K., Downs, M., Harms, T., Hawman, P., Holbrook, S., Kumar, A., Mishra, D., Molotch, N., Primack, R., Rassweiler, A., Schmitt, R., Sutter, L. "Long-term ecological research and the COVID-19 anthropause: A window to understanding social-ecological disturbance". Ecosphere. submitted.


    Henderson A., Ng  B., Landeweer S., Quinete N., Gardinali P."Assessment of sucralose, caffeine and acetaminophen as anthropogenic tracers in aquatic systems across Florida." B. Environ. Contam. Tox. 2020, 1-7.


    Howard, J.L., Lopes, C.C., Wilson, S.S., McGee-Absten, V., Carrión, C.I., Fourqurean, J.W. Decomposition Rates of Surficial and Buried Organic Matter and the Lability of Soil Carbon Stocks Across a Large Tropical Seagrass Landscape. Estuaries and Coasts (2020). https://doi.org/10.1007/s12237-020-00817-x


    Iporac LAR. 2020. Are Asians and Asian-Americans Excluded in Diversity, Equity, and Inclusion Initiatives? Limnology and Oceanography Bulletin, doi: 10.1002/lob.10408


    Leyva, D., Jaffe, R., Fernandez-Lima, F., Structural Characterization of Dissolved Organic Matter at the Chemical Formula Level Using TIMS-FT-ICR MS/MS. Analytical Chemistry 2020, 92 (17), 11960-11966.


    Lugo Charriez K.,  Lemos L.S., Carrazana Y.,  Rodriguez-Casariego J.A,  Eirin-Lopez J.M, Hauser-Davis R.A.,Gardinali P., Soares Quinete N., (2020) "Application of an Improved Chloroform-Free Lipid Extraction Method to staghorn coral (Acropora cervicornis) Lipidomics Assessment". Bulletin of Environmental Contamination and Toxicology  (submitted)


    McCormack, M.A., Fielding, R., Kiszka, J., Paz, V., Jackson, B.P., Bergfelt, D.R. & Dutton, J., 2020. "Mercury and selenium concentrations, and selenium: mercury molar ratios, in small cetaceans taken off St. Vincent, West Indies". Environmental Research, 181: 108908 


    Meeder, J.M., R.W. Parkinson, D. E. Ogurcak, M.S. Ross, J. Kominoski, and S. Castaneda.  Sediment accumulation and OC storage under conditions of Holocene sea-level rise, Southeast Saline Everglades, Florida, U.S.A. Wetlands. Submitted.


    Mekonnen, Y., L. Burton, A. Sarwat, S. Bhansali, “Sensors, IoT, Smart Agriculture and Future of Smart City”, Submitted to Journal of Electrochemical Society, 2020 (Under Review)


    Mekonnen, Y., S. Namduri, L. Burton, A. Sarwat, S. Bhanslai, “Machine Learning Techniques in Wireless Sensor Network based Precision Agriculture”, Journal of Electrochemical Society, 2020 (In press)


    Namuduri, S., B.N. Narayanan, V.S.P. Davuluru, L. Burton, S. Bhansali, “Deep Learning Methods for Sensor based Predictive Maintenance and Future Perspectives for Electrochemical Sensors”, Journal of Electrochemical Society, 2020 (In press)


    Ng, B., Quinete, N., & Gardinali, P. R. (2020). Assessing accuracy, precision and selectivity using quality controls for non-targeted analysis. Science of The Total Environment, 136568 (In press)


    Ng B., Quinete N., Maldonado S., Lugo K., Purrinos J., Briceño H., Gardinali P. "Understanding the occurrence and distribution of emerging pollutants and endocrine disruptors in sensitive South Florida Ecosystems." In Press. Sci. Total Environ. 2020,


    Olanrewaju C.A., Ramirez, C. E., & Fernandez-Lima, F. (2020) "Comprehensive Screening of Polycyclic Aromatic Hydrocarbons and similar compounds using GC-APLI-TIMS-TOFMS/GC-EI-MS". (submitted). Anal. Chem.


    Paduani, M. (2020). Microplastics as novel sedimentary particles in coastal wetlands: A review. Marine Pollution Bulletin, 161, 111739. doi:10.1016/j.marpolbul.2020.111739.


    Perez C.M., Felty Q., Yoo C." Novel ID3 Regulatory Gene Networks Contributing to Brain Vascular Disease." Toxicological Sciences 174(1); 84, March 2020.


    Peña, F.; Nardi, F.; Melesse, A.; Obeysekera, J.; Assessing geomorphic floodplain models for large scale coarse resolution 2D flood modelling in data scarce regions. Geomorphology 2020 (Under review)


    Peña, F.; Nardi, F. Floodplain Terrain Analysis for Coarse Resolution 2D Flood Modeling. Hydrology 2018, 5(4), 52; https://doi.org/10.3390/hydrology5040052


    Pierce J.L.,  Lauretta M.V., Rezek R.J., Rehage J.S., 2020. "Survival of Florida Largemouth Bass in a coastal refuge habitat across years of varying drying severity". Transactions of the American Fisheries Society. 10.1002/tafs.10274


    Presa-Reyes M., Bogosian B., Schonhoff B., Jerauld C., Moreyra C., Gardinali P., Chen S.C.,"A Water Quality Research Platform for the Near-real-time Buoy Sensor Data," The 21st IEEE International Conference on Information Reuse and Integration for Data Science (IEEE IRI 2020), Tuscany Hotel, Las Vegas, Nevada, USA, pp. 287-294, August 11-13, 2020.


    Presa-Reyes M., Chen S.C, "Assessing Building Damage by Learning the Deep Feature Correspondence of Before and After Aerial Images," IEEE 3rd International Conference on Multimedia Information Processing and Retrieval, Shenzhen, Guangdong, China, pp. 43-48, August 6-8, 2020.


    Quinete NS, Hauser-Davis RA, Lemos LS, Moura JF, Siciliano S, Gardinali PR. Occurrence and tissue distribution of organochlorinated compounds and polycyclic aromatic hydrocarbons in Magellanic penguins (Spheniscus magellanicus) from the Southeastern coast of Brazil. Science of the Total Environment 749:141473.


    Regier, P., Larsen, L., Cawley, K., Jaffé, R., Linking hydrology and dissolved organic matter characteristics in a subtropical wetland: a long-term study of the Florida Everglades. Global Biogeochemical Cycles (in press). DOI: 10.1029/2020GB006648.


    Rezek, Ryan J., Jordan A. Massie, James A. Nelson, Rolando O. Santos, Natasha M. Viadero, Ross E. Boucek, and Jennifer S. Rehage. In press. Individual consumer movement mediates food web coupling across a coastal ecosystem. Ecosphere.


    Rodríguez-Casariego, Javier A., Mercado-Molina Alex E., Garcia-Souto Daniel, Ortiz-Rivera Ivanna M., Lopes Christian, Baums Iliana B., Sabat Alberto M., Eirin-Lopez Jose M. Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis. Frontiers in Marine Science, 2020, 7, 822. DOI: 10.3389/fmars.2020.560424  


    Smith, M.A.,  Kominoski, J.S., Gaiser, E.E., Price, R.M., & Troxler, T.G. (2020). Stormwater runoff and tidal flooding transform dissolved organic matter composition and increase bioavailability in urban coastal ecosystems. Journal of Geophysical Research: Biogeosciences. In Review.


    Strickland, B.A. et al 2020. Variation in movement behavior of alligators in response to a major hurricane. Journal Of Animal Biotelemetry (Under Review)


    Van Dam, B.R., Lopes, C.C., Polsenaere, P., Barreras-Apodaca A., Sanchez-Mejia Z.M., Tokoro T., Kuwae T., Gutierrez-Loza L. Rutgersson A. (2020) "Global trends in air-water CO2 exchange over seagrass meadows revealed by atmospheric Eddy Covariance".Earth and Space Science. https://doi.org/10.1002/essoar.10504484.1


    Van Dam, B.R., Lopes, C.C., Polsenaere, P., Price, R.M., Rutgersson, A. and Fourqurean, J.W. (2020), Water temperature control on CO2 flux and evaporation over a subtropical seagrass meadow revealed by atmospheric eddy covariance. Limnol Oceanogr. https://doi.org/10.1002/lno.11620


    Zeller, M. A., Van Dam, B. R., Lopes, C., & Kominoski, J. S. (2020). Carbonate-associated organic matter is a putative FDOM source in a subtropical seagrass meadow. Frontiers in Marine Science, 7, 947.

  • 2019 Publications

    Abiy A.Z., Melesse A.M., Abtew W. "Teleconnection of Regional Drought to ENSO, PDO, and AMO: Southern Florida and the Everglades". Atmosphere (2019), 10, 295


    Abiy A.Z., Melesse A.M., Abtew W., Whitman D. (2019). "Rainfall trend and variability in Southeast Florida: Implications for freshwater availability in the Everglades." PLoS ONE. 14 (2).

    Supplementary Data 


    Beal A.P., Kiszka J.J., Wells R.S. and Eirin-Lopez J.M. (2019) "The Bottlenose Dolphin Epigenetic Aging Tool (BEAT): A Molecular Age Estimation Tool for Small Cetaceans". Front. Mar. Sci. 6:561.

    Raw Data 


    Castellanos A., Ramirez C., Michalkova V., Nouzova M., Noriega F., Fernandez-Lima F. (2019). "Three Dimensional Secondary Ion Mass Spectrometry Imaging (3D-SIMS) of Aedes aegypti ovarian follicles". Journal of Analytical Atomic Spectrometry.

    Supplementary Data 


    Eggenberger C.W., Santos R.O., Frankovich T.A., James W.R., Madden C.J., Nelson J.A., Rehage J.S.(2019) "Coupling telemetry and stable isotope techniques to unravel movement: Snook habitat use across variable nutrient environments". Fisheries Research.


    Erin-Lopez J.M., Putnam H.M. "Annual Review of Marine Science, Marine Environmental Epigenetics". Annu. Rev. Mar. Sci. 2019. 11:7.1–7.34.


    Gesesse, A.A. Melesse, AM., Abera. F. Abiy. AZ. 2019. Modeling Hydrological Responses to Land Use Dynamics, Choke, Ethiopia, Water Conservation Science and Engineering, DOI: 10.1007/s41101-019-00076-3


    Gessesse, A.A., Assefa M. Melesse & Anteneh Z. Abiy (2019) Land use dynamics and base and peak flow responses in the Choke mountain range, Upper Blue Nile Basin, Ethiopia, International Journal of River Basin Management, DOI: 10.1080/15715124.2019.1672700


    Leyva D., Valadares L., Porter J., Wolff J., Jaffè R., Fernandez-Lima F. (2019). "Understanding the Structural Complexity of Dissolved Organic Matter: isomeric diversity." Faraday Discussions.

    Supplementary Data


    Regier P., Briceño H., Boyer J.N. (2019) "Analyzing and comparing complex environmental time series using a cumulative sums approach". MethodsX. Vol. 6, pg 779-787.


    Moncada A. (2019) Theme 4: "What Does Diversity Require of Us?". Fisheries, 44: 373-374.


    Suarez-Ulloa V., Rivera-Casas C., Michel M., Eirin-Lopez JM. "Seasonal DNA methylation variation in the flat tree oyster Isognomon Alatus from a mangrove ecosystem in north Biscayne Bay, Florida" Journal of Shellfish Research, Vol. 38, No. 1, 1–10, 2019.


    Torres A., Reis G.,  Absten J., Bricen H.O.,  Bobadilla L., Smith R.N. (2019). Correlating Water Quality and Profile Data in the Florida Keys. OCEANS: Conference & Exposition, Seattle 2019. (ACCEPTED)


    Van Dam, B. R., Lopes, C., Osburn, C. L., and Fourqurean, J. W.: Net heterotrophy and carbonate dissolution in two subtropical seagrass meadows, Biogeosciences, 16, 4411–4428, https://doi.org/10.5194/bg-16-4411-2019, 2019.


    Yanez, Tiffany. The Effects of Copper Exposure on Fish Locomotory and Predator-Prey Interactions. (2019). Florida International University.

  • 2018 Publications

    Banisakher D., Presa-Reyes M.E., Eisenberg J.D., Allen J., Finlayson M.A., Price R., Chen S.C. " Ontology-Based Supervised Concept Learning for the Biogeochemical Literature," 2018 IEEE International Conference on Information Reuse and Integration (IRI), Salt Lake City, UT, 2018, pp. 402-410.

    SupplementaryData 


    Beal A., Rodriguez-Casariego J.A., Rivera-Casas C., Suarez-Ulloa V., Eirin-Lopez J.M. #71 " Environmental Epigenomics and Its Applications in Marine Organisms".


     Benigni, P., Porter, J., Ridgeway, M.E., Park, M.A., Fernandez-Lima F. “ Increasing Analytical Separation and Duty Cycle with Nonlinear Analytical Mobility Scan Functions in TIMS-FT-ICR MS” Anal. Chem., 2018, 90 (4), pp 2446–2450.

    Supplementary Data


    Joshua Eisenberg. Automatic Extraction of Narrative Structure from Long Form Text. (2018). Florida International University.


    Hernández-Delgado E.A., Mercado-Molina A.E., Suleimán-Ramos S.E., and Lucking, M.A. (March 28th 2018). "Multi-disciplinary Lessons Learned from Low-Tech Coral Farming and Reef Rehabilitation: II. Coral Demography and Social-Ecological Benefits, Corals in a Changing World Carmenza Duque", IntechOpen.


    Perez, Christian M., M. Doke, C. Yoo, and Q. Felty (2018). "Molecular determinants of brain vascular disorders from exposure to polychlorinated biphenyls." The Toxicologist: Supplement to Toxicological Sciences. 162 (1), Abstract no. 2127. ISSN: 1096-6080


    Rodriguez‐Casariego J.A., Ladd M.C., Shantz A.A., Lopes C., Cheema M.S., Kim B., Roberts S.B., Fourqurean JW, Ausio J, Burkepile DE, Erin-Lopez JM." Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral Acropora cervicornis " . Ecol Evol. 2018; 00:1–15.

    Supplementary Data                                              Raw Data 


    Smith, Abraham Jeffrey. Development and Application of Aquatic Toxicology Studies for the Assessment of Impacts Due to Chemical Stressors Using Non-Standard Indigenous Organisms. (2018). Florida International University.


    Tose L.V., Benigni P., Leyva D., Sundberg A., Ramírez C.E., Ridgeway M.E. (2018). Coupling trapped ion mobility spectrometry to mass spectrometry: trapped ion mobility spectrometry–time-of-flight mass spectrometry versus trapped ion mobility spectrometry–Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry. 32 (15), 1287.

  • 2017 Publications

    Benigni, P., Marin, R. Sandoval, K., Gardinali, P., Fernandez-Lima, F., "Chemical Analysis of Water-accommodated Fractions of Crude Oil Spills Using TIMS-FT-ICR MS" Journal of Visualized Experiments (JOVE) 2017 , Issue 121, e55325.


    Benigni, P., Sandoval, K., Thompson, C.J., Ridgeway, M.E., Park, M.A., Gardinali, P., Fernandez-Lima, F., "Analysis of Photoirradiated Water Accommodated Fractions of Crude Oils Using Tandem TIMS and FT-ICR MS" Environmental Science & Technology 2017, Vol. 51 (11), pp 5978-5988.

    Supplementary Data


    Eisenberg, J.D., Banisakher, D., Presa, M., Unthank, K., Finlayson, M., Price, R., & Chen, S.C., "Toward Semantic Search for the Biogeochemical Literature" IEEE International Conference on Information Reuse and Integration (IRI) 2017, pp 517-525. 

    Gonzalez-Raymat, H., Liu, G.L., Liriano, C., Li, Y.B., Yin, Y.G., Shi, J.B., Jiang, G.B., Cai, Y., "Elemental mercury: Its unique properties affect its behavior and fate in the environment" Environmental Pollution 2017, Vol. 229, pp 69-86.


    Gonzalez-Romero, R., Suarez-Ulloa, V., Rodriguez-Casariego, J., Garcia-Souto, D., Diaz, G.,Smith, A., Pasantes, J.J., Rand, G., Eirin-Lopez, J.M., "Effects of Florida Red Tides on Histone variant expression and DNA methylation in the Eastern oyster Crassostrea virginica" Aquatic Toxicology 2017, Vol. 186, pp 196–204.


    Pouyanfar, S., and Chen, S.C. "T-LRA: Trend-based Learning Rate Annealing for Deep Neural Networks" IEEE Third International Conference on Multimedia Big Data 2017, pp 50-57.


    Prego-Faraldo, M.V., Vieira, L.R., Eirin-Lopez, J.M., Mendez, J., Guilhermino, L., "Transcriptional and biochemical analysis of antioxidant enzymes in the mussel Mytilus galloprovincialis during experimental exposures to the toxic dinoflagellate Prorocentrum lima" Marine Environmental Research 2017, Vol. 129, pp 304-315.


    Regier, P. “Linking Organic Matter Dynamics to Management, Restoration, and Climate in the Florida Everglades” (2017) FIU Electronic Theses and Dissertations.3385.


    Rivera-Casas, C., Gonzalez-Romero, R., Garduño, R.A., Cheema, M.S., Ausio, J., Eirin-Lopez, J.M., "Molecular and Biochemical Methods Useful for the Epigenetic Characterization of Chromatin-Associated Proteins in Bivalve Molluscs" Frontiers in Physiology2017, Vol. 8 (490).


    Tian, H.M., and Chen, S.C. "MCA-NN: Multiple Correspondence Analysis based Neural Network for Disaster Information Detection" IEEE Third International Conference on Multimedia Big Data 2017, pp 268-275.

  • 2016 Publications

    Flower, H., Rains, M., Lewis, D., Zhang, J., Price, R., "Saltwater intrusion as potential driver of phosphorus release from limestone bedrock in a coastal aquifer" Estuarine, Coastal and Shelf Science 2016, Vol. 184, pp 166-176.


    Pouyanfar, S., and Chen, S.C., "Semantic Concept Detection Using Weighted Discretization Multiple Correspondence Analysis for Disaster Information Management" IEEE 17th International Conference on Information Reuse and Integration (IRI) 2016, pp 556-564.


    Pouyanfar, S. and Chen S.C., "Semantic Event Detection Using Ensemble Deep Learning" IEEE International Symposium on Multimedia (ISM) 2016, San Jose, CA. pp 203-208.


    Sadiq, S., Yan, Y., Shyu, M.L., Chen, S.C., & Ishwaran, H. "Enhancing Multimedia Imbalanced Concept Detection Using VIMP in Random Forests" Proceedings of the IEEE International Conference on Information Reuse and Integration 2016, pp 601–608.


    Yan, Y., Zhu, Q., Shyu, M. L., & Chen, S.C. "A classifier ensemble framework for multimedia big data classification" IEEE 17th International Conference on Information Reuse and Integration (IRI) 2016, pp 615-622.

Conference & Meeting Presentations

  • 2022 Presentations

    Marcel Bozas, RECOVER (Restoration Coordination & Verification) Multi-agency meeting. January 10, 2023


    Juliet M. Wong, NOAA Northwest Fisheries Science Center (NWFSC) Monster Seminar Jam Series (virtual). January 20, 2022


    Melinda Paduani, Miami Plastic Patrol MWK x DFO Training. January 26, 2022


    Nicholas Castillo, Miami International Boat Show Conservation Speaker. February 2022


    Samuel Kent, FIU Earth and Environment Research Symposium. February 2022


    Melissa Lau, American Association of Geographers 2022 Virtual Conference. February 2022


    Paulo Padrao Lopes, IEEE Oceans conference (virtual). February 2022


    Cesar A. Rojas, IEEE Oceans conference. February 2022


     Francisco Febronio Peña Guerra, UF Water Institute Symposium. February 2022


    Nicholas Castillo, FIU study finds pharmaceutical contaminants in bonefish, Florida Politics.  February 2, 2022


    Nicholas Castillo, The Search for What’s Harming Florida’s Beloved Bonefish, Hakai Magazine. February 2, 2022


    Nicholas Castillo, Bonefish on Drugs, Garden & Gun Magazine. February 2, 2022


    Nicholas Castillo, 58 Different Pharmaceutical Contaminants Found in Florida’s Bonefish, Field & Stream Conservation magazine. February 2, 2022


    Marbelys Garriga, Ocean Studies Charter School STEAM Fair. February 3, 2022


    Nicholas Castillo, Cocktail of drugs taint bonefish in Biscayne Bay and Keys, The Miami Herald and Yahoo! News. February 4, 2022


    Nicholas Castillo, Florida House Speaker talks water conservation following release of FIU bonefish study, News Break – Florida Politics. February 4, 2022


    Casey B. Butler, FIU Biosymposium. February 5, 2022


    Jessica Cardé, FIU Biosymposium. February 5, 2022


    Peter Flood, FIU Biosymposium. February 5, 2022


    Laura García Barcia, FIU Biosymposium, February 5, 2022


    Riley Hatch, FIU Biosymposium. February 5, 2022


    Liz D. Ortiz Munoz, FIU Biosymposium. February 5, 2022


    Allison White, Florida International University Biosymposium. February 5, 2022


    Nicholas Castillo, Florida’s Bonefish Are Riddled With Human Drugs. The Atlantic. February 6, 2022


    Nicholas Castillo, Drugs found in bonefish from Biscayne Bay to Marquesas, Florida Keys Free Press. February 9, 2022


    Nicholas Castillo, Pharmaceuticals in our bonefish. National Public Radio – WLRN South Florida Roundup. February 14, 2022


    Mason Bradbury, FIU, Earth & Environment Graduate Symposium, virtual. February 18, 2022


    Nicole Cordoba, FIU Department of Earth and Environment Graduate Symposium. February 18, 2022


    Lauren Emer, FIU Earth and Environment Graduate Symposium. February 18, 2022


    Samuel Kent, FIU Earth and Environment Graduate Symposium. February 18, 2022


    Nicholas Castillo, Pills in gills: Prescription drugs discovered in Florida Fish, NBC-2 South Florida News. February 21, 2022


    Daniela Brigitte Daniele, UF Water Institute Symposium. February 23, 2022


    Mason Bradbury, AAG Annual Meeting 2022 (virtual). February 25, 2022


    Nicholas Castillo, American Fisheries Society Florida Chapter. March 2022


    Anahita Esmaeilian, ACS National Meeting. March 2022


    Nicholas Castillo, FIU University Graduate School Scholarly forum. March 2022


    Nicole Cordoba, Florida Coastal Everglades All Scientists Meeting. March 2, 2022


    Ikechukwu Onwuka, FCE LTER All Scientists Meeting. March 2, 2022


    Anahita Esmaeilian, ACS (American Chemical Society) National Meeting. March 2022


    Nicholas Evans, Benthic Ecology Meeting. March 2022


    Afia Anjuman, FIU Chemistry and Physics Visitation Day. March 11, 2022


    Christian Perez, Society of Toxicology conference. March 29, 2022


    Jonathan Rodemann, Ocean Sciences Meeting (virtual). March 2022


    Thomas Shannon, Florida Coastal Everglades LTER- 2022 All Scientists Meeting. March 2022


    Jazmin Locke, Scholarly forum by FIU University Graduate School (UGS). April 5, 2022


    Marcel Bozas, FIU Analysis of South Florida Ecosystems guest lecture. April 6, 2022


    Nicholas Castillo, Florida Bay Forever Brunch on the Bay. April 2022


    Jonathan Rodemann, Florida Chapter meeting of the American Fisheries Society. April 2022


    Javier A. Rodriguez Casariego, SAM-PR meeting. April 2022


    Mack White, Annual Meeting of the Florida Chapter American Fisheries Society. April 2022


    Mary Williams, Benthic Ecology Meeting. April 2022


    Marcel Bozas, Native American Fish and Wildlife Society (NAFWS) Annual National Conference. May 2022


    Jessica Cardé, Southeast and Mid-Atlantic Marine Mammal Symposium. May 2022


    Nicholas Castillo, Fact Network Conferences. May 2022


    Melanie Esch, International Conference for Aquatic Invasive Species (virtual). May 2022


    Francisco Febronio Peña Guerra, Association of State Floodplain Managers. May 2022


    Xuerong Li, SETAC Focused Topic Meeting. May 2022


    Kassidy Troxell, Nontarget Analysis for Environmental Risk Assessment session hosted by the Society of Environmental Toxicology and Chemistry (SETAC). May 2022


    Lauren Kabat, Joint Aquatic Sciences Meeting. May 16, 2022


    Jazmin Locke, Joint Aquatic Science Meeting. May 16, 2022


    Alan Mock, Joint Aquatic Sciences Meeting. May 16, 2022


    Ryan James, FACT Network meeting. May 17, 2022


    Lauren Emer, Joint Aquatic Sciences Meeting. May 20, 2022


    Peter Flood, Joint Aquatic Sciences Meeting. May 20, 2022


    Danielle Hatt, Joint Aquatic Sciences Meeting. May 20, 2022


    Lowell Iporac, Joint Aquatic Sciences Meeting. May 20, 2022


    Ikechukwu Onwuka, Joint Aquatic Science Meeting. May 20, 2022


    Liz D. Ortiz Munoz, Joint Aquatic Science Meeting. May 20, 2022


    Samuel Miller, FIU Biomolecular Science Institute Research Symposium. May 31, 2022


    Jonathan Rodemann, FACT Network summer meeting. May 2022


    Cassandra Fuller, ASMS (American Society of Mass Spectrometry) annual conference. June 2022


    Dennys Leyva, ASMS (American Society of Mass Spectrometry) annual conference. June 2022


    Samuel Miller, American Society for Mass Spectrometry (ASMS). June 2022


    Miguel Santos-Fernandez, American Society for Mass Spectrometry (ASMS). June 2022


     Stormie Collins, The Crustacean Society meeting. June 2022


     Jazmin Locke, Seminar for Curtis and Rogers Landscape Architecture Firm. June 9, 2022.


    Cassandra Fuller, FIU Annual Biomolecular Sciences Institute Research Symposium (BSI). June 22, 2022


    Miguel Santos-Fernandez, FIU Annual Biomolecular Sciences Institute Research Symposium (BSI). June 22, 2022


    Afia Anjuman, ICMGP 2022 – International Conference on Mercury as a Global Pollutant. July 2022


    Katherine Castrillon, Botany Conference. July 2022


    Melanie Esch, International Coral Reef Symposium. July 8, 2022


    Serena Hackerott, International Coral Reef Symposium. July 8, 2022


    Lauren Emer, Association for Tropical Biology meeting. July 14, 2022


    Miguel Santos-Fernandez, International Conference on Ion Mobility Spectrometry (ISIMS). July 2022


    Brianna L. Martinez, Biennial Conference on Chemical Education. August 1, 2022


    Jessica Cardé, Conference on the Biology of Marine Mammalogy. August 2022


    Peter Flood, Ecological Society of America. August 2022


    Cassandra Fuller, FLACS FAME. August 2022


    Samuel Miller, American Chemical Society 98th Florida Annual Meeting and Exposition (ACS FAME). August 2022


    Jonathan Rodemann, International Seagrass Biology Workshop. August 2022


    Miguel Santos-Fernandez, American Chemical Society Florida Section (FAME). August 2022


    Eman Taher, 24th Biennial Conference on the Biology of Marine Mammals. August 2022


    Kristine Zikmanis, Ecological Society of America. August 2022


    Melinda Paduani, Miami Plastic Patrol x Dream In Green x Miami-Dade Teachers Training (virtual). September 10, 2022


    Tommy Shannon, FCE LTER All-Scientists Meeting. September 22, 2022


    Serena Hackerott, Reef Futures Conference. September 28, 2022


    Cesar A. Rojas, GEM Annual Board Meeting and Conference. September 2022


    Mack White, NSF-LTER All-Scientist Meeting. September 2022


    Milena Ceccopieri da Rocha, Southeastern Regional Meeting of the American Chemical Society (SERMACS). October 2022


    Haley K. Glasmann, SEAC (Southeast Acoustics Consortium). October 2022


    Samuel Miller, Society of Forensic Toxicologists (SOFT). October 2022


    Javier A. Rodriguez-Casariego, Aquatic Models in Human Disease. October 2022


    Kassidy Troxell, Southeastern Regional Meeting of the American Chemical Society (SERMACS). October 2022


    Allison White, 7th Southeast Area Acoustics Consortium Conference. October 11, 2022


    Kelcie L. Chiquillo, Epigenetics in Marine and Aquatic Biology Conference (EpiMar). October 12, 2022


    Serena Hackerott, Epigenetics in Marine and Aquatic Biology Conference (Epimar). October 12, 2022


    Javier A. Rodriguez-Casariego, Epimar conference. October 2022


    Nicholas Castillo, Suncoast Water Keeper Guest Speaker. October 15, 2022


    Stefanie Landeweer, Southeastern Regional Meeting of the American Chemical Society (SERMACS). October 20, 2022


    Cesar A. Rojas, IEEE Oceans conference. October 2022


    Nicholas Tucker, Southeast Acoustics Consortium. October 2022


    Juliet M. Wong, Epigenetics in Marine and Aquatic Biology Conference (EPIMAR). October 2022


    Kristine Zikmanis, National Estuarine Research Reserves Meeting. October 2022


    Tommy Shannon, Global Lakes Ecological Observation Network (GLEON) All-Hands Meeting. November 3, 2022


    Ryan James, Bonefish & Tarpon Trust Science Symposium and Flats Expo. November 4, 2022


    Elena Tugusheva, Innovation & Fast Prototyping Workshop at FIU. November 8, 2022


    Mark Annunziato, SETAC North America. November 2022


    Nicholas Castillo, Bonefish and Tarpon Trust Symposium. November 2022


    Cody Eggenberger, Bonefish and Tarpon Trust Symposium. November 2022


    Maria E. Guerra de Navarro, SETAC North America 43rd Annual Meeting. November 2022


    Lowell Iporac, 75th Annual Gulf and Caribbean Fisheries Institute Conference. November 2022


    Leila Soledade Lemos, Society of Environmental Toxicology and Chemistry (SETAC) North America 43rd Annual Meeting. November 2022


    Xuerong Li, SETAC North America 43rd Annual Meeting. November 2022


    Olutobi Daniel Ogunbiyi, SETAC North America 43rd Annual Meeting. November 2022


    Peter Oladoye, SETAC North America 43rd Annual Meeting. November 2022


    Kassidy Troxell, North America Annual Meeting of the Society of Environmental Toxicology and Chemistry (SETAC). November 2022


    Ryan James, University of Memphis seminar. November 10, 2022


    Stefanie Landeweer, SETAC North America. November 14, 2022


    Jazmin Locke, FIU Agroecology high school immersion day. November 14, 2022


    Jonathan Rodemann, Ocean Tracking Network Symposium. November 2022


    Shakira Trabelsi, Bonefish and Tarpon Trust 7th International Science Symposium. November 2022


    Kelcie L. Chiquillo, Biology Seminar at the University of Puerto Rico. December 13, 2022


    Jose Fuentes, IEEE IRC conference. December 2022


    Jonathan Rodemann, FACT Network winter meeting. December 2022


    James Sturges, FACT Network Winter Meeting. December 2022

     

  • 2021 Presentations

    Francisco Febronio Peña Guerra, International Conference on Hydroinformatics. January 2021


    Camilo Roa, Southern Division American Fisheries Society Conference. January 22, 2022


    Anne Sabol, FIU Biosymposium. January 2021


    Thomas Shannon, FIU Biosymposium. January 2021


    Mason Bradbury, Deering Symposium (virtual). February 2, 2021


    Lowell Iporac, 1st Annual Deering Estate Symposium (virtual). February 2021


    Mason Bradbury, FIU Earth & Environment Graduate Symposium (virtual). February 19, 2021


    Angelica Moncada, FIU Department of Earth and Environment Symposium. February 2021


    Ikechukwu Onwuka, FIU Earth and Environment Graduate Research Symposium. February 2021


    Sara Pezeshk, TNOC Festival. February 2021


    Lowell Iporac, 12th International Phycological Congress (virtual). March 2021


    Lowell Iporac, Undergraduate Research FIU Conference (virtual). March 2021


    Christian Perez,  Society of Toxicology 61st Annual Meeting. March 2022


    Marcel Bozas, Greater Everglades Ecosystem Restoration (GEER) Virtual Conference. April 2021


    Mason Bradbury, AAG Annual Meeting (virtual). April 10, 2021


    Nicholas Castillo, GEER conference. April 2021


    Cody Eggenberger, Greater Everglades Ecosystem Restoration Meeting (virtual). April 2021


    Anahita Esmaeilian, European Geoscience Union-General Assembly, Virtual conference. April 2021


    Lowell Iporac, Greater Everglades Ecosystem Restoration Conference (virtual). April 2021


    Dennys Leyva, FIU Virtual Graduate Student Appreciation Week. April 2021


    Brianna L. Martinez, 261st National Meeting of the ACS, Virtual. April 2021


    Brian Ng, Southeast Florida Coral Reef Initiative (SEFCRI) Technical Advisory Meeting. April 2021


    Jazmin Locke, Greater Everglades Ecosystem Restoration (GEER) Conference. April 2021


    Ikechukwu Onwuka, Greater Everglades Ecosystem Restoration (virtual). April 2021


    Christian Perez, Annual Biomolecular Sciences Institute Research Symposium. April 2021


    Sara Pezeshk, UM Symposium on Tropical and Subtropical Coastal Resilience. April 2021


    Ryan James, Greater Everglades Ecosystem Restoration. April 2021


    Mary Williams, Annual Benthic Ecology Meeting in Portsmouth. April 2021


    Mason Bradbury, SFS Annual Meeting 2021 (virtual). May 25, 2021


    Lauren Emer, Society for Freshwater Science Annual Meeting (virtual). May 2021


    Melissa Lau, Society of Freshwater Science 2021 Virtual Conference. May 2021


    Ikechukwu Onwuka, Society for Freshwater Science Annual Meeting (virtual). May 2021


    Sara Pezeshk, 8th International Conference on Architecture and Built Environment. May 2021


    Javier A. Rodriguez Casariego, ALSO Ocean Sciences Meeting. June 2021


    Matthew Smith, Association for the Sciences of Limnology and Oceanography Virtual Meeting. June 2021


    Marcel Bozas, Miccosukee Tribal Meeting on Deer Management. July 2021


    Laura García Barcia, American Elasmobranch Society (virtual). July 2021


    Marbelys Garriga, Meet the Scientist at FIU Camp Discover. July 9, 2021


    Ikechukwu Onwuka, Everglades Foundation Annual Symposium. Summer 2021


    Afia Anjuman, Sci-Mix session at ACS Fall 2021. August 23, 2021


    Anahita Esmaeilian, ACS Fall 2021 Virtual Meeting & Expo. August 2021


    Afia Anjuman, ACS Fall 2021 National Meeting & Exposition. August 25, 2021


    Melinda Paduani, Ecological Society of America Annual Meeting. August 2021


    Valeria Paz, Ecological Society of America Annual meeting (virtual). August 2021


    Marbelys Garriga, Lake Worth Lagoon Initiative Water Resources Working Group. October 14, 2021


    Leila Soledade Lemos, FLUOROS Global Conference. October 2021


    Xuerong Li, 17th Annual Workshop on Emerging High-Resolution Mass Spectrometry (HRMS) and LC-MS/MS Applications in Environmental Analy sis and Food Safety. October 2021


    Nicholas Castillo, FIU Earth and Environment Department 3 Minute Thesis Competition. Fall 2021


    Cassandra Fuller, ASMS Conference on Mass Spectrometry and Allied Topics. Fall 2021


    Dennys Leyva, ASMS virtual meeting. Fall 2021


    Clement Ajibade Olanrewaju, American Society of Mass Spectrometry (ASMS). Fall 2021


    Matthew Smith, American Shore and Beach Preservation Association panel. Fall 2021


    Kassidy Troxell, Presentations to DERM representatives and Biscayne Bay Board of Directors. Fall 2021


    Nicholas Castillo, FIU UGS 10 minute PhD talk in Earth and Environment. Fall 2021


    Marcel Bozas, FWC Quarterly Meeting (virtual). November 2021


    Danni Cui, SETAC North America 42nd Annual Meeting. November 2021


    Cody Eggenberger, Ocean Tracking Network Symposium (virtual). November 2021


    Stefanie Landeweer, SETAC North America annual meeting. November 2021


    Leila Soledade Lemos, SETAC North America 42nd Annual Meeting, virtual. November 2021


    Xuerong Li, SETAC North America 42nd Annual Meeting. November 2021


    Jazmin Locke, Coastal and Estuarine Research Federation (CERF) Biannual Virtual Conference. November 11, 2021


    Jazmin Locke, International Conference on Environment and Society. November 22, 2021


    Brian Ng, SETAC North America 42nd Annual Meeting, SciCon4. November 2021


    Olutobi Daniel Ogunbiyi, SETAC North America 42nd Annual Meeting. November 2021


    Ikechukwu Onwuka, International Conference on Environment and Society (virtual). November 2021


    Francisco Febronio Peña Guerra, International Conference on Environment and Society. November 2021


    Francisco Febronio Peña Guerra, Water and Climate Resilience Metrics Workgroup South Florida Water Management District. November 2021


    Thomas Shannon, UC-Boulder Diatom Workshop. November 2021


    Matthew Smith, Coastal Estuarine and Research Federation Virtual Meeting. November 2021


    Kassidy Troxell, SETAC North America 42nd Annual Meeting virtual conference. November 2021


    Ryan James, Coastal and Estuarine Research Federation meeting. November 2021


    Nicole Cordoba, American Geophysical Union meeting. December 2021


    Anahita Esmaeilian, American Geoscience Union-General Assembly. December 2021


    Dennys Leyva, IEEE International Conference on Bioinformatics and Biomedicine. December 2021


    Francisco Febronio Peña Guerra, American Geophysical Union Annual Meeting. December 2021


    Ryan James, Department of Biological Sciences, Walla Walla University Virtual Colloquium. 2021

  • 2020 Presentations

    Lowell Iporac, Broward Shell Club Meeting. February 2020


    Christian Perez, Stempel College 2nd Annual Research Day. February 14, 2020


    Christian Perez, 59th Annual Society of Toxicology Conference. March 13, 2020


    Christian Perez, EHS Departmental Seminar. March 2020


    Lowell Iporac, Meeting of Graduate Student Research at the Deering Estate. May 2020


    Dennys Leyva, ASMS 2020 reboot Conference. June 1, 2020


    Dennys Leyva, ASMS 2020 reboot Conference. June 1, 2020


    Melinda Paduani, Meet the Scientist (MTS) Program visiting researcher presentation, Camp Inspire Virtual Summer Camp. June 29, 2020 


    Christian Perez, 2020 Annual FIU Biomolecular Sciences Symposium. July 31, 2020


    Maria Presa-Reyes, IEEE MIPR 2020. August 5, 2020


    Maria Presa-Reyes, IEEE IRI 2020. August 12, 2020


    Francisco Pena, ARCH 6041/6051 Research StudioSeptember 9, 2020 


    Lowell Iporac, 73nd Annual Meeting of the Gulf and Caribbean Fisheries Institute Punta Cana. November 2020 


    Lowell Iporac, 42nd Annual Southeast Phycology Colloquium. November 2020


    Lowell Iporac, 42nd Annual Southeast Phycology Colloquium. November 2020


     Danni Cui, SETAC North America 41st Annual Meeting. November 15, 2020


    Kassidy Troxell, SCICON2 SETAC North America 41st Annual Meeting. November 15, 2020


    Brian Ng, SETAC North America 41st Annual Meeting. November 15, 2020


    Brian Ng, SETAC North America 41st Annual Meeting. November 15, 2020


    Xuerong Li, SETAC North America 41st Annual Meeting. November 15, 2020


    Nicholas Castillo, Local bonefish are on drugs, Florida Keys Free Press. December 23, 2020


    Francisco Pena, American Geophysical Union Fall Meeting. December 2020 


    Daniela Daniele, Annual meeting of the Society for Freshwater Science. 2020


    Melissa Lau, Annual meeting of the Society for Freshwater Science. 2020


    Javier Rodriguez-Casariego, Ocean Sciences Meeting. 2020


    Javier Rodriguez-Casariego, HurriCon: Science at the Intersection of Hurricanes and the Populated Coast. 2020


    Clement Olanrewaju, Annual American Society for Mass Spectrometry Conference. 2020


    Matthew Smith, Ecological Society of America. 2020


    Matthew Smith, National Watershed and Stormwater Conference. 2020


    Yasir Mamun, Annual American Society for Mass Spectrometry Conference. 2020 


    Anahita Esmaeilian, ACS Fall 2020 Virtual Meeting & Expo, Moving Chemistry From Bench to Market, USA. 2020

  • 2019 Presentations

    Lowell Iporac, Biosymposium. February 2, 2019


    Serena Hackerott, Biosymposium. February 2, 2019


    Matthew Smith, Biosymposium. February 2, 2019


    Javier Rodriguez-Casariego, Biosymposium. February 2, 2019


    Danielle Ogurcak, Biosymposium. February 2, 2019


    Afia Anjuman, American Chemical Society in Orlando, FL. February 20, 2019.


    Danielle Ogurcak, Association for the Sciences of Limnology and Oceanography (ASLO) Aquatic Science meeting. February 25, 2019


    Alex Mercado, Association for the Sciences of Limnology and Oceanography (ASLO) Aquatic Science meeting. February 25, 2019


    Matthew Smith, Urban Resilience to Extremes Sustainability Research Network's All Hands Meeting, Baltimore, MD. March 20, 2019


    Melinda Paduani, Association of Marine Labs of the Caribbean 39th Conference. March 24, 2019


    Jennie Rivera, American Chemical Society in Orlando, FL. March 25, 2019


    Anthony Castellanos, American Society for Mass Spectrometry (ASMS) Conference. April 4, 2019


    Cody Eggenberger, Florida Chapter American Fisheries Society Meeting. April 4, 2019


    Dennys Leyva, American Society for Mass Spectrometry (ASMS) Conference. April 11, 2019


    Christian Perez, National Hispanic Medical Conference. April 12, 2019


    Anthony Castellanos, Florida Annual Meeting and Exposition (FAME), Florida Local Section of the American Chemical Society (FLACS). April 24, 2019


    Cody Eggenberger, Greater Everglades Ecosystem Restoration (GEER) Meeting.  April 24, 2019


    Dennys Leyva, Florida Annual Meeting and Exposition (FAME), Florida Local Section of the American Chemical Society (FLACS). April 24, 2019.


    Anteneh Abiy, Earth Educators Rendezvous workshop. May 1, 2019


    Lowell Iporac, Association of Marine Laboratories of the Caribbean 39th Scientific Conference. May 20, 2019


    Clement Olanrewaju, 15th Annual Workshop on LC/MS/MS Applications in Environmental Analysis and Food Safety. May 29, 2019


    Brian Ng, 15th Annual Workshop on LC/MS/MS Applications in Environmental Analysis and Food Safety. May 29, 2019


    Autumn Henderson, 15th Annual Workshop on LC/MS/MS Applications in Environmental Analysis and Food Safety. May 29, 2019


    Alex Mercado Molina, Netlogo Modelling workshop in Germany. May 31, 2019.


    Anthony Castellanos, American Society for Mass Spectrometry (ASMS) Conference. June 2, 2019


    Clement Olanrewaju, American Society for Mass Spectrometry (ASMS) Conference. June 2, 2019


    Dennys Leyva, American Society for Mass Spectrometry (ASMS) Conference. June 2, 2019


    Serena Hackerott, MEGA Functional Genomics and Gene Expression Workshop. June 5, 2019


    Lowell Iporac, Annual Meeting of the Phycological Society of America. June 24, 2019


    Lowell Iporac, 73rd Annual Meeting of the Phycological Society of America. June 25, 2019


    Brian Ng, Society of Environmental Toxicology and Chemistry (SETAC). September 17, 2019.


    Steven Landeweer, Society of Environmental Toxicology and Chemistry (SETAC). September 17, 2019.


    Autumn Henderson, Society of Environmental Toxicology and Chemistry (SETAC). September 17, 2019.


    Lowell Iporac, Gulf Coast and Fisheries Institute (GCFI) conference. September 27, 2019. 


    Marbelys Garriga, VoLo VISTA climate correction conference finalist presentation. September 30, 2019.


    Nicholas Castillo, Coastal and Estuarine Research Federation (CERF) conference. October 8, 2019.


    Francisco Pena Guerra, Southeast Florida Regional Climate Leadership Summit. December 3, 2019.

  • 2018 Presentations

    Anthony Castellanos, Annual Symposium. January 26, 2018


    Javier Rodriguez-Casariego, Biosymposium. February 3, 2018


    Tiffany Yanez, Biosymposium. February 3, 2018


    Anthony Castellanos, American Society for Mass Spectrometry Conference. February 20, 2018


    Christian Perez, Society of Toxicology conference. March 12, 2018


    Anthony Castellanos, Graduate Student Appreciation Week. March 19, 2018


    Matthew Smith, Urban Resilience to Extremes Sustainability Research Network All Hands Meeting. March 19, 2018


    Christian Perez, Provost Awards Ceremony sponsored by FIU's Graduate School. March 23, 2018


    Christian Perez, FIU Graduate Annual Symposium. May 4, 2018


    Anthony Castellanos, 66th Conference of the American Society for Mass Spectrometry. June 3, 2018


    Autumn Henderson, Society of Environmental Toxicology and Chemistry (SETAC). August 14, 2018


    Steven Landeweer, Society of Environmental Toxicology and Chemistry (SETAC). August 15, 2018


    Brian Ng, Society of Environmental Toxicology and Chemistry (SETAC). August 15, 2018


    Jone Corrales, Society of Environmental Toxicology and Chemistry (SETAC). August 21, 2018


    Connor Born, Geologic Society of America conference. September 28, 2018.


    Jone Corrales, Association of Ecosystem Research Centers meeting (AERC). October 3, 2018


    Javier Rodriguez-Casariego,Association for the Sciences of Limnology and Oceanography (ASLO) Aquatic Science meeting. October 13, 2018


    Danielle E. Ogurcak, Association for the Sciences of Limnology and Oceanography (ASLO) Aquatic Science meeting in San Juan. October 17, 2018.


    Angelica Moncada, American Geophysical Union meeting. October 25, 2018.


    Samuel Kent, American Geophysical Union meeting. October 30, 2018.


    Anteneh Abiy, American Geophysical Union meeting. October 31, 2018.


    Christian Lopes, Association for the Sciences of Limnology and Oceanography (ASLO) Aquatic Science meeting. November 6, 2018

  • 2017 Presentations

    Kalli Unthank, Alan Alda Center for Communicating Science Boot Camp. January 19, 2017


    Javier Rodriguez-Casariego, Coral Reef Conservation Program CRCP Learning Exchange. January 26, 2017


    Paolo Benigni, Emerging Researchers National Conference. January 21, 2017


    Jason Howard, ASLO 2017 Aquatic Sciences Meeting. February 26, 2017


    Anteneh Abiy, Biosymposium. March 1, 2017


    Joshua Allen, Biosymposium. March 1, 2017


    Kalli Unthank, Biosymposium. March 1, 2017


    Jason Howard, NC Water Resources Research Institute Annual Conference. March 15, 2017


    Matthew Smith, Urban Resilience to Extreme Sustainability Research Network UREx-SRN All Hands Meeting. March 21, 2017


    Joshua Allen, Greater Everglades Ecosystem Restoration GEER. April 18, 2017


    Shu-Ching Chen, IEEE International Conference on Multimedia Big Data. April 20, 2017


    Samira Pouyanfar, IEEE International Conference on Multimedia Big Data. April 20, 2017


    Deya Banisakher, 30th International FLAIRS Conference. May 23, 2017


    Javier Rodriguez-Casariego, Association of Marine Laboratories of the Caribbean AMLC. May 24, 2017


    Rosario Vidales, Society of Wetland Scientists SWS Annual Meeting. June 7, 2017


    Danielle Ogurcak, Society of Wetland Scientists SWS Annual Meeting. June 7, 2017


    Josh Eisenberg, IEEE International Conference on Information Reuse and Integration (IRI). June 19, 2017.


    Deya Banisakher, 2017 IEEE International Conference on Information Reuse and Integration _IRI_. August 4, 2017


    Abraham Smith, Early Emerging Metazoan Conference. August 11, 2017


    Autumn Henderson, SETAC North America 38th Annual Meeting.  November 12, 2017

  • 2016 Presentations

    Shu-Chin Chen, 2016 IEEE 17th International Conference on Information Reuse and Integration. July 2016


    Samira Pouyanfar, 2016 IEEE International Symposium on Multimedia. July 2016


    Javier Rodriguez-Casariego, Society of Environmental Toxicology and Chemistry SETAC. November 2016


    Jose Erin-Lopez, Society of Environmental Toxicology and Chemistry SETAC. November 2016


     

Facilities & Equipment

We provide computer stations, labs and workspaces on both the Modesto Maidique and Biscayne Bay Campuses at FIU, which are available to all affiliated students, postdocs, faculty and staff.

We also operate the CAChE Nutrient Analysis Lab, which represents three distinct services; first, it serves as a NELAC-accredited nutrient analysis laboratory to directly support research; second, it contains a dedicated student area for education and training related to traditional water quality analyses; and finally, it provides a space where students and faculty can work to improve or innovate technologies, and develop alternative or novel techniques.